Input file

Sample sheet (CSV format) with sample information

Sample_sheet.csv:

sample_id	group	read1	read2
SN09	Healthy	FASTQ/SN09/SL1_S9_R1_001.fastq.gz	FASTQ/SN09/SL1_S9_R2_001.fastq.gz
SN10	Disease	FASTQ/SN10/SL2_S10_R1_001.fastq.gz	FASTQ/SN10/SL2_S10_R2_001.fastq.gz
SN11	Healthy	FASTQ/SN11/SL3_S11_R1_001.fastq.gz	FASTQ/SN11/SL3_S11_R2_001.fastq.gz
SN12	Disease	FASTQ/SN12/SL4_S12_R1_001.fastq.gz	FASTQ/SN12/SL4_S12_R2_001.fastq.gz
SN13	Healthy	FASTQ/SN13/SL5_S13_R1_001.fastq.gz	FASTQ/SN13/SL5_S13_R2_001.fastq.gz
SN14	Disease	FASTQ/SN14/SL6_S14_R1_001.fastq.gz	FASTQ/SN14/SL6_S14_R2_001.fastq.gz