Credits

👤 Authors and Maintainers

Role	Name & Link	Description
Main Author	Jyotirmoy Das	Lead designer, developer, and overall coordinator for the TwistMethNext pipeline.
Maintainer	Jyotirmoy Das	Actively maintaining the pipeline, fixing bugs, and implementing new features.
Contributors	All Contributors	Thanks to everyone who helped in development, testing, and enhancement. Contributions welcome!

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📄 Citation

If you use TwistMethNext in your work, please cite:

Das, J. (2024). TwistMethNext (v1.0.0). Zenodo. https://doi.org/10.5281/zenodo.14204261

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❓ Help, FAQ, Troubleshooting

• Refer to the User Manual for detailed usage instructions and guidance.

• For bug reports, questions, or feature requests, please open an issue on GitHub.

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📜 License

This project is licensed under the terms of the GNU General Public License v3.0.

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🙏 Acknowledgements

Research Institutions

• Core Facility, Faculty of Medicine and Health Sciences, Linköping University Linköping University Core Facility
• Clinical Genomics Linköping, Science for Life Laboratory, Sweden Clinical Genomics Linköping
• National Academic Infrastructure for Supercomputing in Sweden (NAISS)

  The computations/data storage were enabled by resources provided by the National Academic Infrastructure for Supercomputing in Sweden (NAISS), partially funded by the Swedish Research Council through grant agreement no. 2022-06725.

These institutions provided invaluable resources and support for the development and testing of the TwistMethNext pipeline.

Additional Thanks

• Open Source Community: Special thanks to the developers and contributors of Nextflow, Bismark, methylKit, EdgeR and other bioinformatics tools integrated into this pipeline.
• Users and Testers: A heartfelt thank you to all the early adopters, testers, and collaborators who helped refine and improve the tool through their feedback and bug reports.

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