QC reporting

MultiQC is used for the QC reporting combining all results from the FastQC, Trim galore, Bismark Alignment, Bismark Deduplication, Bismark summary report, and Qualimap results.

Output:

  • Generates an interactive HTML report (multiqc_report.html) and a data file (multiqc_data.json).

  • Output includes summary statistics, plots, and tool-specific metrics.

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